GgaEX6025829 @ galGal4
Exon Skipping
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5330097-5331293:-
Coord C1 exon
chr24:5331015-5331293
Coord A exon
chr24:5330422-5330541
Coord C2 exon
chr24:5330097-5330273
Length
120 bp
Sequences
Splice sites
3' ss Seq
GATTCCTTCCTGTTATGCAGTGC
3' ss Score
5.32
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TCCCTCCTCTGATCCAGCCCTTCGAGTTCCCACCAGCCTCCATCGGGCAGCTCCTCTACATCCCCTGCGTGGTCTCCTCCGGGGACATGCCTATCCACATCACCTGGCGCAAGGATGGGCACGTCATCCTCTCCGGCTCAGGCGTCACCATTGAGAGCAAGGAGTTCATGAGCTCCCTGCAGATCTCCAGTGTCTCCCTCAAGCACAATGGCAACTACACGTGCATCGCCAGCAACGCCGCCGCCACAGTCAGCCGCGAGCGGCAGCTCATCGTGAGGG
Seq A exon
TGCCTCCTCGGTTTGTGGTTCAACCCAACAACCAAGATGGCATTTATGGTAAAGCCGGGGTGCTGAATTGCTCCGTCGACGGGTACCCTCCTCCTAAAGTGATGTGGAAACATGCGAAAG
Seq C2 exon
GCAGTGGGAACCCCCAGCAGTACCACCCCATCCCGCTGACGGGCCGCATCCAGATCCTCCCCAACAGCTCACTGCTCATCCGCCACGTGCTGGAGGAGGACATCGGCTACTACCTCTGCCAGGCCAGCAACGGGGTGGGCACGGACATCAGCAAGTCCATGTTCCTCACCGTGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.171 C2=0.083
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(0.1=0.0),PF0767911=I-set=WD(100=94.7)
A:
PF0767911=I-set=PU(39.6=92.7)
C2:
PF0767911=I-set=PD(59.4=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGGCAACTACACGTGCA
R:
TCACGGTGAGGAACATGGACT
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]