MmuEX6065548 @ mm10
Exon Skipping
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45683558-45685392:+
Coord C1 exon
chr9:45683558-45683836
Coord A exon
chr9:45684214-45684333
Coord C2 exon
chr9:45685216-45685392
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTCACTTCCCTTTCCACAGTGC
3' ss Score
9.16
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGCCCCCTCTGATCCAGCCCTTCGAGTTCCCCCCTGCCTCCATCGGCCAGCTGCTCTACATTCCCTGTGTGGTGTCCTCGGGGGACATGCCAATCCGCATCACCTGGAGGAAGGACGGACAGGTGATCATCTCAGGCTCAGGCGTGACCATCGAGAGCAAGGAGTTCATGAGCTCCCTGCAGATCTCCAGCGTCTCCCTCAAGCACAACGGCAACTACACTTGCATCGCCAGCAACGCAGCGGCCACTGTGAGCAGGGAGCGCCAGCTCATCGTGCGTG
Seq A exon
TGCCCCCTCGATTTGTGGTGCAGCCCAATAACCAAGATGGCATCTACGGCAAAGCTGGTGTGCTCAACTGCTCGGTAGATGGCTACCCACCACCCAAGGTGATGTGGAAGCATGCCAAAG
Seq C2 exon
GGAGTGGGAACCCCCAGCAATATCACCCGGTGCCCCTCACTGGCCGCATCCAGATCCTACCCAACAGCTCCCTGCTGATACGCCACGTCCTGGAAGAGGACATCGGCTACTACCTCTGCCAGGCCAGCAACGGCGTGGGCACCGACATCAGCAAGGCCATGTTCCTCACCGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087-'23-41,'23-36,32-41=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.171 C2=0.083
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=94.7)
A:
PF0767911=I-set=PU(39.6=92.7)
C2:
PF0767911=I-set=PD(59.4=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCATCGAGAGCAAGGAGT
R:
TAGCCGATGTCCTCTTCCAGG
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types