RnoEX6035550 @ rn6
Exon Skipping
Gene
ENSRNOG00000016502 | Dscaml1
Description
DS cell adhesion molecule-like 1 [Source:RGD Symbol;Acc:1304887]
Coordinates
chr8:49988692-49990495:+
Coord C1 exon
chr8:49988692-49988970
Coord A exon
chr8:49989359-49989478
Coord C2 exon
chr8:49990319-49990495
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCCACTTCCTTTTCTACAGTGC
3' ss Score
7.95
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGCCCCCTCTGATCCAGCCCTTTGAGTTCCCCCCTGCCTCCATCGGCCAGCTGCTCTACATCCCCTGTGTGGTGTCCTCGGGGGACATGCCCATCCGCATCACCTGGAGAAAGGACGGACAGGTGATCATCTCAGGCTCAGGCGTGACCATCGAGAGCAAGGAATTCATGAGCTCCCTGCAGATCTCCAGCGTCTCCCTCAAACACAATGGCAACTACACTTGCATTGCCAGCAACGCAGCGGCCACCGTGAGCAGGGAGCGCCAGCTCATCGTGCGCG
Seq A exon
TGCCCCCTCGATTTGTGGTGCAGCCCAACAACCAGGATGGCATCTATGGCAAAGCTGGTGTGCTCAACTGCTCGGTAGATGGCTACCCGCCACCCAAGGTCATGTGGAAGCATGCCAAAG
Seq C2 exon
GGAGTGGGAACCCTCAGCAATATCACCCAGTGCCCCTCACTGGCCGCATCCAGATCCTGCCCAACAGCTCCCTGCTGATACGCCACGTCCTGGAAGAGGACATCGGCTACTACCTCTGCCAGGCCAGCAACGGTGTGGGCACTGACATCAGCAAGGCCATGTTCCTCACGGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016502-'24-20,'24-19,25-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.171 C2=0.083
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=94.7)
A:
PF0767911=I-set=PU(39.6=92.7)
C2:
PF0767911=I-set=PD(59.4=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCAGCGTCTCCCTCAAA
R:
ATGGCCTTGCTGATGTCAGTG
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]