DreEX6075335 @ danRer10
Exon Skipping
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12179000-12179861:-
Coord C1 exon
chr15:12179580-12179861
Coord A exon
chr15:12179259-12179378
Coord C2 exon
chr15:12179000-12179176
Length
120 bp
Sequences
Splice sites
3' ss Seq
TAATATGTTCTTCATTGTAGTTC
3' ss Score
7.35
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TTCCTCCCCTTATCCAGCCCTTTGACTTTCCTCCCACCTCCATTGGTAAGCTGATGTACATAGCCTGTGTGGTGTCCTCCGGAGACATGCCAATCCGGATCACCTGGAGAAAGGACGGGCAGGAGATTGTGTCGGGAACAGCAGGAGTCACCATCGAAACCAAGGAGTTCATGAGTTCCCTTCAGATCTCTAAAGTTTCACTTAAGCACAATGGAAACTACACCTGTATTGCCAGCAATGACGCAGCAACTGTCAGTTCAGAGCGACAACTAATAGTAACAG
Seq A exon
TTCCCCCTCGCTTTCGGGTTCAGCCTAATAACCAGGATGGTATCTATGGCAAGTCAGAGGTTCTAAACTGCTCTGTTGAAGGGTACCCTCCACCCAAAGTTGTTTGGAAACATGCCAAAG
Seq C2 exon
GTATAGGAAACCCCCAGCAGTACCATCCGGTTCCACTGACAGGTCGTATTCAAATCCTATCCAATGGTTCTCTGCTGATCCGCCATGTTCTAGAAGAAGATCGGGGATACTACTTGTGTCAGGCCAGCAATGGAGTGGGATCAGACATCAGCAAAAGCATGATGCTTACTGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=92.6)
A:
PF0767911=I-set=PU(39.6=92.7)
C2:
PF0767911=I-set=PD(59.4=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGACGGGCAGGAGATTG
R:
GCGGATCAGCAGAGAACCATT
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]