GgaEX6008097 @ galGal4
Exon Skipping
Gene
ENSGALG00000006702 | MFGE8
Description
lactadherin isoform 2 precursor [Source:RefSeq peptide;Acc:NP_001264040]
Coordinates
chr10:12528416-12529141:+
Coord C1 exon
chr10:12528416-12528529
Coord A exon
chr10:12528727-12528908
Coord C2 exon
chr10:12528986-12529141
Length
182 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGCTGCCATCCTCAGGCT
3' ss Score
9.19
5' ss Seq
CAGGTGTCG
5' ss Score
3.7
Exon sequences
Seq C1 exon
ACAAGAATGAGTGCTCCTCAGAGCCTTGCAAAAATGGGGGCACCTGCGTGGACATGGATGGTGACTACGCCTGCAAGTGTCCTTCTCCCTTCTTTGGGAAGACTTGCCATGCCC
Seq A exon
GCTGTGCCATTCCCCTGGGCATGGAAGGAGGGGCCATCTCCGATGCACAGCTCTCAGCCTCCTCCGTCTACTATGGTTTCCTTGGCCTCCAGCGCTGGGGGCCTGAGCTCGCTCGCCTCAACAACCACGGCATTGTCAACGCGTGGACCTCCAGCAACTATGACAAGAGCCCGTGGATCCAG
Seq C2 exon
GCCAACCTGCTGAGGAAGATGAGGCTGAGTGGTGTTATCACACAAGGTGCTCGCCGCGTGGGCAAGGCCGAGTACGTGCGTGCCTATAAGGTGGCCTACAGCCTAGATGGGCGTGAGTTCACCTTCTACAAGGACGAGAAGCTTAACACAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006702-'9-9,'9-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
C2:
PF0075420=F5_F8_type_C=FE(36.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCTTGCAAAAATGGGGG
R:
TGTCTGTGTTAAGCTTCTCGTCC
Band lengths:
249-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]