MmuEX6011629 @ mm9
Exon Skipping
Gene
ENSMUSG00000030605 | Mfge8
Description
milk fat globule-EGF factor 8 protein [Source:MGI Symbol;Acc:MGI:102768]
Coordinates
chr7:86287288-86288274:-
Coord C1 exon
chr7:86288164-86288274
Coord A exon
chr7:86287755-86287936
Coord C2 exon
chr7:86287288-86287440
Length
182 bp
Sequences
Splice sites
3' ss Seq
TGGTCACTGTCTCCCTGCAGGTT
3' ss Score
12.06
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGACCAACTACTACAACCTGGATGGAGAATACATGTTCACCACAGCCGTCCCCAATACTGCCGTCCCCACCCCGGCCCCCACCCCCGATCTTTCCAACAACCTAGCCTCCC
Seq A exon
GTTGTTCTACACAGCTGGGCATGGAAGGGGGCGCCATTGCTGATTCACAGATTTCCGCCTCGTCTGTGTATATGGGTTTCATGGGCTTGCAGCGCTGGGGCCCGGAGCTGGCTCGTCTGTACCGCACAGGGATCGTCAATGCCTGGACAGCCAGCAACTATGATAGCAAGCCCTGGATCCAG
Seq C2 exon
GTGAACCTTCTGCGGAAGATGCGGGTATCAGGTGTGATGACGCAGGGTGCCAGCCGTGCCGGGAGGGCGGAGTACCTGAAGACCTTCAAGGTGGCTTACAGCCTCGACGGACGCAAGTTTGAGTTCATCCAGGATGAAAGCGGTGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030605-'5-4,'5-3,6-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0075420=F5_F8_type_C=PU(31.9=72.1)
C2:
PF0075420=F5_F8_type_C=FE(36.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACTACTACAACCTGGATGGA
R:
CCACCGCTTTCATCCTGGATG
Band lengths:
255-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: