GgaEX6009859 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNM9]
Coordinates
chr12:2654561-2655324:+
Coord C1 exon
chr12:2654561-2654689
Coord A exon
chr12:2654767-2654912
Coord C2 exon
chr12:2655210-2655324
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGCCGTGCTGCTGCCCACAGAGC
3' ss Score
9.56
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGGGCAGCTGTACTCGGGTACCTCCAGTGATTTCATGGGCAGCAGTGCCGCCTTCTTCCGCACCGAGGTCGGCGGGGCTGAGCGGGGCTACATCCGCACGGAGCAGCACCAGGACCACTGGCTGCACG
Seq A exon
AGCCCACGTTCGTCGGTGCCTTTGCCATCCCCGACACCCACAACCCACACGACGACAAGGTCTACGTCTTCTTCCGTGAGACGGCCCTGGAGGGCGGGCAGTGGGAGCGGCGACACATCCACGCCAGGGTGGCCCGGGTCTGCAAG
Seq C2 exon
AACGACGTCGGAGGGAAGCGTGGCCTCATCAACCGCTGGAGCACATTCCTCAAGGCCCGCCTGCTGTGCTCCATCCCCGGGCCCCAGGGCACGCAGACACACTTTGACCAGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'6-10,'6-8,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.6=100)
A:
PF0140314=Sema=FE(10.7=100)
C2:
PF0140314=Sema=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCAGCTGTACTCGGG
R:
AACTGGTCAAAGTGTGTCTGCG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]