DreEX6099615 @ danRer10
Exon Skipping
Gene
ENSDARG00000040920 | si:dkey-49n23.1
Description
si:dkey-49n23.1 [Source:ZFIN;Acc:ZDB-GENE-050208-762]
Coordinates
chr22:30877414-30881182:-
Coord C1 exon
chr22:30881054-30881182
Coord A exon
chr22:30879463-30879605
Coord C2 exon
chr22:30877414-30877528
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATACCAGCTTCTCTTCACAGAGC
3' ss Score
7.6
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGAGAGCTGTACGCTGGGACGGCCGTAGACTTCATGGGAACAAACGCTGCCATTTTTCGCACATCTGTGCATAGCAACAATCAACACTACATCCGCACTGAAGCGTACCAGGACCACTGGCTAAATG
Seq A exon
AGCCGGAGTTTGTGGGATCATATTCCATCCCTGACACACACAGCTTAGACGATGACAAAGTATACTTCTTCTTTAAAGAGACCGCCGTAGAGTCGAACCAGCTCGACAAGCGTATCTACAGCCGAGTGGCTCGTGTCTGCAAG
Seq C2 exon
AATGACATCGGTGGAAAACGAAGCTTGATTAACCGCTGGAGCACCTTCTTGAAGGCCAGACTTGTATGCACAGTTCCAGGACCTGGGGGCATGGACACACACTTTGACGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040920-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.6=100)
A:
PF0140314=Sema=FE(10.5=100)
C2:
PF0140314=Sema=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGCCGTAGACTTCATG
R:
CCAGCTCGTCAAAGTGTGTGT
Band lengths:
226-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]