RnoEX0079290 @ rn6
Exon Skipping
Gene
ENSRNOG00000017704 | Sema3f
Description
semaphorin 3F [Source:RGD Symbol;Acc:1308514]
Coordinates
chr8:116446521-116447188:-
Coord C1 exon
chr8:116447069-116447188
Coord A exon
chr8:116446731-116446870
Coord C2 exon
chr8:116446521-116446635
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGCCACCTGTCTACCCACAGATC
3' ss Score
9.71
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
ATGAGGAGCTCTACGCAGGAGTGTACATCGATTTTATGGGCACTGATGCAGCCATTTTCCGTACGCTTGGAAAGCAGACAGCCATGCGCACAGATCAGTACAACTCCCGGTGGCTCAATG
Seq A exon
ATCCTTCATTCATACATGCTGAGCTCATCCCTGACAGCGCTGAGCGCAACGACGATAAACTCTACTTCTTCTTCCGAGAGCGCTCTGCAGAGGCTCCGCAGAACCCTGCGGTGTACGCCCGCATCGGGCGCATCTGCCTC
Seq C2 exon
AACGATGACGGTGGCCATTGCTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCACGGCTCGTCTGCTCTGTGCCAGGCGAGGATGGCATTGAGACCCACTTCGATGAACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017704-'17-13,'17-12,18-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.5=100)
A:
PF0140314=Sema=FE(9.7=100)
C2:
PF0140314=Sema=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGAGCTCTACGCAGGAG
R:
GGAGTTCATCGAAGTGGGTCT
Band lengths:
235-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]