GgaEX6047951 @ galGal3
Exon Skipping
Gene
ENSGALG00000013370 | Q8AXA8_CHICK
Description
NA
Coordinates
chrUn_random:37256739-37258211:+
Coord C1 exon
chrUn_random:37256739-37256858
Coord A exon
chrUn_random:37257875-37258014
Coord C2 exon
chrUn_random:37258097-37258211
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACTGCGTCGTGCCCTTGCAGACC
3' ss Score
10.39
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
ATGAAGAACTCTATGCTGGGGTCTACATCGACTTCATGGGCACTGATGCAGCCATCTTCCGCACTATGGGCAAGCAGACAGCCATGAGGACAGACCAGTACAATTCACGCTGGCTCAACG
Seq A exon
ACCCTGCCTTCGTCCGTGCCCAGCTCATCCCTGACAGCAGCGAGAGGAATGATGACAAACTCTACTTCTTCTTCCGGGAGAAGTCGGCGGATGCCCCGCTCAGCCCCGGGGTCTATTCCCGCATCGGGCGCATCTGCCTG
Seq C2 exon
AACGACGATGGAGGACACTGCTGCCTGGTGAACAAATGGAGCACCTTCCTGAAGGCCCGGCTCGTCTGCTCCGTGCCAGGACCCGATGGGATCGAGACACACTTTGATGAGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.0=100)
A:
PF0140314=Sema=FE(10.4=100)
C2:
PF0140314=Sema=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACTCTATGCTGGGGTCT
R:
GAAGCTCATCAAAGTGTGTCTCGA
Band lengths:
234-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]