RnoEX6012450 @ rn6
Exon Skipping
Gene
ENSRNOG00000006631 | Sema3e
Description
semaphorin 3E [Source:RGD Symbol;Acc:1310973]
Coordinates
chr4:17352726-17355965:-
Coord C1 exon
chr4:17355846-17355965
Coord A exon
chr4:17354330-17354472
Coord C2 exon
chr4:17352726-17352840
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTTTTTTTCTGTAGAAC
3' ss Score
10.28
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTAATGAACTGTTTGCTGGGCTCTACAGTGACTACTGGGGCCGAGACTCAGCGATCTTCCGCAGCCTGGGGAAGCTCGGCCATATCCGCACCGAGCATGACGATGAGCGGCTGCTGAAAG
Seq A exon
AACCAAAATTTGTAGGTTCATATATGATTCCTGATAACGAAGACCCAGAGGACAACAAAATGTACTTCTTCTTCACTGAGAAGGCATTGGAGGCAGAGAACAATGCCCACACGATCTACACCCGAGTGGGGCGGCTGTGCGTG
Seq C2 exon
AATGACATGGGAGGACAGAGAATCCTGGTGAATAAGTGGAGCACATTCCTCAAAGCACGGCTGGTTTGCTCAGTACCAGGGATGAATGGAATTGACACACACTTTGACGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006631-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.0=100)
A:
PF0140314=Sema=FE(10.6=100)
C2:
PF0140314=Sema=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGAACTGTTTGCTGGGCTCT
R:
CTAATTCGTCAAAGTGTGTGTCA
Band lengths:
234-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]