BtaEX6026795 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014920 | SEMA3E
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:HGNC:10727]
Coordinates
chr4:37367524-37370648:+
Coord C1 exon
chr4:37367524-37367643
Coord A exon
chr4:37368708-37368850
Coord C2 exon
chr4:37370534-37370648
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTTTACTTATCTAGAGC
3' ss Score
7.67
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTAGTGAATTGTTTGCCGGACTCTACAGTGACTATTGGGGCAGAGACGCTGCCATCTTCAGGAGCCTGGGACGACTGGCTCAGATCCGCACTGAGCATGATGATGAGCGCCTGTTGAAAG
Seq A exon
AGCCAAAATTTGTAGGTTCTTATATGATCCCTGACAATGAAGACCGAGATGACAACAAAGTGTATTTCTTTTTCACGGAGAAGGCCCTGGAGGCCGAAAACAGCGCCCATGCAATTTACACCAGAGTGGGGCGACTCTGTGTG
Seq C2 exon
AATGATATGGGAGGACAGAGAATACTAGTGAATAAGTGGAGCACTTTCCTGAAAGCTAGACTGGTTTGCTCAGTACCAGGCATGAATGGGATTGATACATATTTTGATGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014920-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.0=100)
A:
PF0140314=Sema=FE(10.6=100)
C2:
PF0140314=Sema=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGAATTGTTTGCCGGACTCT
R:
TGTATCAATCCCATTCATGCCTGG
Band lengths:
218-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]