GgaEX0012436 @ galGal4
Exon Skipping
Gene
ENSGALG00000008509 | SEMA3E
Description
semaphorin-3E precursor [Source:RefSeq peptide;Acc:NP_989573]
Coordinates
chr1:9428941-9433874:+
Coord C1 exon
chr1:9428941-9429060
Coord A exon
chr1:9431103-9431245
Coord C2 exon
chr1:9433760-9433874
Length
143 bp
Sequences
Splice sites
3' ss Seq
AATTTTGTTTTCTTTTGAAGAAC
3' ss Score
7.69
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTGGTGAACTTTTTACTGGTCTCTACAGTGACTACTGGGGAAGAGATGCTGCTGTCTTTCGCACCATGAATCGTATGGCACATCTCCGAACTGAACCTGATAGTGAGCGCCTGCTGAAAG
Seq A exon
AACCGAAGTTTGTTGGTTCATACATGATTCCTGACAATGAAGACCATGACGATAACAAAGTGTATTTCTTCTTTACTGAAAAAGCATTAGAGGCTGAGACAAGCACTCATGCCATTTACACCAGAGTGGGACGCGTGTGTGTG
Seq C2 exon
AATGATATGGGAGGACAGCGGATGCTTGTGAATAAATGGAGCACTTTCCTCAAAACCAGACTAGTTTGTTCTGTGCCTGGGAGAAATGGAATTGATACGCATTTTGATGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008509-'8-9,'8-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.1=100)
A:
PF0140314=Sema=FE(10.7=100)
C2:
PF0140314=Sema=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGAACTTTTTACTGGTCTCT
R:
TCATCAAAATGCGTATCAATTCCA
Band lengths:
230-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]