HsaEX6008740 @ hg19
Exon Skipping
Gene
ENSG00000170381 | SEMA3E
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:10727]
Coordinates
chr7:83035261-83037803:-
Coord C1 exon
chr7:83037684-83037803
Coord A exon
chr7:83036413-83036555
Coord C2 exon
chr7:83035261-83035375
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTATTTTTTGCTCCTATAGAAC
3' ss Score
8.64
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTAGTGAATTGTTTGCTGGACTCTACAGTGACTACTGGAGCAGAGACGCTGCGATCTTCCGCAGCATGGGGCGACTGGCCCATATCCGCACTGAGCATGACGATGAGCGTCTGTTGAAAG
Seq A exon
AACCAAAATTTGTAGGTTCATACATGATTCCTGACAATGAAGACAGAGATGACAACAAAGTATATTTCTTTTTTACTGAGAAGGCACTGGAGGCAGAAAACAATGCTCACGCAATTTACACCAGGGTCGGGCGACTCTGTGTG
Seq C2 exon
AATGATGTAGGAGGGCAGAGAATACTGGTGAATAAGTGGAGCACTTTCCTAAAAGCGAGACTCGTTTGCTCAGTACCAGGAATGAATGGAATTGACACATATTTTGATGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170381-'9-10,'9-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(23.9=95.1)
A:
PF0140314=Sema=FE(10.6=100)
C2:
PF0140314=Sema=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTGAATTGTTTGCTGGACTCT
R:
TGTGTCAATTCCATTCATTCCTGGT
Band lengths:
219-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)