GgaEX6010303 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:8896664-8898593:-
Coord C1 exon
chr12:8898421-8898593
Coord A exon
chr12:8897804-8897944
Coord C2 exon
chr12:8896664-8896822
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTCATTGTTTTCTTTTTAGTAA
3' ss Score
8.5
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
ATTGCAGAGAAAACAGAACTGAAAATAGCTCAGTCTCGAGAAGGCTATCGACCTATTGCAAAGCATTCCTCCGTGCTGTTCTTCAGCATTGCAGACTTGGCAAACATTGACCCCATGTACCAGTACTCCCTTAGCTGGTTTGTTAATCTCTTCATCAACTCTATTCATGACAG
Seq A exon
TAACAAATCAAAAGTTTTGGAGAAGCGACTTCGATATCTGACTGACCACTTCACATACAACTTGTTCTGCAATGTGTGCCGCTCACTGTTTGAAAAGGACAAGCTGCTCTTTTCCTTTTTGCTATGCTGTAATCTTCTCAT
Seq C2 exon
GGCTAAAAATGAAATAGAACGTCAAGAGTTTATGTTCTTATTAACTGCTGGTGTGGGTCTCAAGAATAAATACAAGAATCCAGATCCGTCTTGGCTACCAGACAAGAGCTGGGATGAGCTATGTCGTGCAAGTGAAATCCCAGCTTTGAAAGAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'60-64,'60-63,61-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0302810=Dynein_heavy=PU(4.6=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATTCCTCCGTGCTGTT
R:
CACGACATAGCTCATCCCAGC
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]