HsaEX1011881 @ hg38
Exon Skipping
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57334782-57357348:-
Coord C1 exon
chr3:57357176-57357348
Coord A exon
chr3:57352085-57352225
Coord C2 exon
chr3:57334782-57334940
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTTTTAACTTTAGTAA
3' ss Score
7.16
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATTGCAGAAAAAACAGAACTCAAAATAGCAGAGTCTCGAGAAGGCTATAGACCCATCGCCAAACACTCGTCAGTGTTATTCTTTAGCATTGCAGACCTGGCTAATATTGATCCCATGTATCAGTACTCTCTCACGTGGTTTGTGAACCTTTATATCAACTCTATTCATGACAG
Seq A exon
TAACAAATCCAAGATTTTGGAAAAGCGCCTACGATATTTAAATGACCACTTCACATACAACTTATATTGTAATATATGCCGATCACTATTTGAGAAGGACAAGCTGTTATTTTCCTTTTTATTATGTGCCAATCTTCTTCT
Seq C2 exon
GGCAAGGAAAGAGATTGAATACCAGGAACTGATGTTTCTTTTAACTGGAGGAGTAAGTCTTAAAAGTGCTGAGAAAAATCCTGATCCAACTTGGCTACAGGACAAAAGCTGGGAGGAAATCTGTCGGGCAAGTGAATTTCCTGCCTTCAGAGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844_MULTIEX2-19/19=18-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PD(5.2=10.4)
C2:
PF0302810=Dynein_heavy=PU(12.4=61.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCCAAACACTCGTCAGT
R:
CTTGCCCGACAGATTTCCTCC
Band lengths:
252-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains