GgaEX6010303 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8649286-8651215:-
Coord C1 exon
chr12:8651043-8651215
Coord A exon
chr12:8650426-8650566
Coord C2 exon
chr12:8649286-8649444
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTCATTGTTTTCTTTTTAGTAA
3' ss Score
8.5
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
ATTGCAGAGAAAACAGAACTGAAAATAGCTCAGTCTCGAGAAGGCTATCGACCTATTGCAAAGCATTCCTCCGTGCTGTTCTTCAGCATTGCAGACTTGGCAAACATTGACCCCATGTACCAGTACTCCCTTAGCTGGTTTGTTAATCTCTTCATCAACTCTATTCATGACAG
Seq A exon
TAACAAATCAAAAGTTTTGGAGAAGCGACTTCGATATCTGACTGACCACTTCACATACAACTTGTTCTGCAATGTGTGCCGCTCACTGTTTGAAAAGGACAAGCTGCTCTTTTCCTTTTTGCTATGCTGTAATCTTCTCAT
Seq C2 exon
GGCTAAAAATGAAATAGAACGTCAAGAGTTTATGTTCTTATTAACTGCTGGTGTGGGTCTCAAGAATAAATACAAGAATCCAGATCCGTCTTGGCTACCAGACAAGAGCTGGGATGAGCTATGTCGTGCAAGTGAAATCCCAGCTTTGAAAGAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'68-74,'68-73,69-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0302810=Dynein_heavy=PU(4.6=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATTCCTCCGTGCTGTT
R:
CACGACATAGCTCATCCCAGC
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]