MmuEX6040088 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27672361-27678370:+
Coord C1 exon
chr14:27672361-27672533
Coord A exon
chr14:27674869-27675009
Coord C2 exon
chr14:27678212-27678370
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTCTCATTTTGACTTTTTAGCAA
3' ss Score
7.59
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTTGCAGAAAAAACAGAGCTCAAAATAGCAGAGTCGCGAGAAGGATACAGGCCCATCGCCAAACATTCCTCAGTGCTATTCTTTAGCATTGCAGACCTGGCCAACATTGATCCCATGTACCAGTACTCTCTCACCTGGTTTGTGAACCTTTACATCAACTCCATTCATGACAG
Seq A exon
CAACAGATCCAAAATCTTGGAAAAGCGCCTGCGCTATTTAAATGACCACTTCACATACAACTTATATTGCAACATATGCCGATCTCTGTTCGAGAAAGACAAGTTGTTGTTCTCCTTTTTGTTATGTGCTAATCTTCTTCT
Seq C2 exon
GGCCAAGAAAGAGATTGAATACCAGGAACTGATGTTTCTTTTAACTGGAGGAGTAAGTCTCAAGAGTGCTGAGAAAAACCCTGACCCAGACTGGCTACAGGATAAAAGCTGGGAGGAGATTTGCAGAGCAAGTGAACTTCCAGTCTTCCATGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'54-57,'54-55,55-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0302810=Dynein_heavy=PU(4.6=61.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCGCCAAACATTCCTCA
R:
TCTGCAAATCTCCTCCCAGCT
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: