GgaEX6014481 @ galGal3
Exon Skipping
Gene
ENSGALG00000008150 | RASAL1
Description
NA
Coordinates
chr15:11516525-11516921:-
Coord C1 exon
chr15:11516866-11516921
Coord A exon
chr15:11516675-11516788
Coord C2 exon
chr15:11516525-11516586
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGGGAGTCCTCTGCCCACAGAAC
3' ss Score
6.58
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
Exon sequences
Seq C1 exon
TCTGGCTCCAGCGATCCCTACTGCGTGGTCAAGGTGGACAATGAGGTGGTGGCCAG
Seq A exon
AACAGCCACGGTGTGGAGAAGCCTGAACCCATTTTGGGGTGAGGAGTTCACCCTGCGCCTGCCCGGCGGCTTCCACAGCCTCACCATCTACGTGCTGGATGAAGACACCATTGG
Seq C2 exon
GCACGATGACGTGATCGGCAAAGTGTCGCTGAGCCACCAGCAGATCTCTGCACAGCCGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(27.3=94.7)
A:
PF0016825=C2=FE(57.6=100)
C2:
PF0016825=C2=PD(13.6=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCCAGCGATCCCTAC
R:
GCGGCTGTGCAGAGATCTG
Band lengths:
114-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]