HsaEX0052385 @ hg38
Exon Skipping
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113119128-113135599:-
Coord C1 exon
chr12:113135398-113135599
Coord A exon
chr12:113128065-113128178
Coord C2 exon
chr12:113119128-113119259
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCTGCACCTCCTTTTGCAGGAC
3' ss Score
10.73
5' ss Seq
CGGGTTTGT
5' ss Score
3.45
Exon sequences
Seq C1 exon
CTACCCGGGTCTCGGACAGGCGGCACTGGGACCACGAGGCAGGGAGCCAGGCTTGAAGCAGGTGACATGTAGACGTCCCCTGGTCCAGCCTCGGAACCTGAGCGCCCTTCTGCCTGGAAAGTTTGTGGCTAGGCGCCATGGCCAAGAGCAGCTCCCTGAATGTTCGCGTGGTGGAGGGCCGCGCGCTGCCTGCCAAGGACGT
Seq A exon
GACAGCTACTGTCTGGAGGAGCCTGGGCCCCTTCTGGGGGGAGGAGTACACGGTGCACCTGCCTCTGGATTTCCACCAGCTGGCCTTCTACGTGCTGGATGAGGACACTGTCGG
Seq C2 exon
ACCATCAAGAAGACTCGCTTCCCGCACTGGGATGAAGTGCTGGAGCTGCGGGAGATGCCAGGTGCCCCGTCCCCACTGCGGGTGGAGCTCTGGGACTGGGACATGGTGGGCAAGAATGACTTCTTGGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344_MULTIEX1-2/7=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(18.3=68.2)
A:
PF0016825=C2=FE(46.3=100)
C2:
PF0016825=C2=FE(52.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTAGACGTCCCCTGGTC
R:
TCATTCTTGCCCACCATGTCC
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development