MmuEX6020434 @ mm9
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121102823-121105138:+
Coord C1 exon
chr5:121102823-121102879
Coord A exon
chr5:121104815-121104928
Coord C2 exon
chr5:121105077-121105138
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCTAGCCCCCCTCTTGCAGGAC
3' ss Score
8.76
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
GTCTGGAAGCAGTGACCCCTATTGTCTGGTGAAAGTGGATGACCAAGTGGTGGCCAG
Seq A exon
GACAGCAACCATCTGGAGGAGCCTGAGCCCCTTTTGGGGGGAGGAGTACACCGTTCACCTTCCATTGGACTTCCACCACCTGGCCTTCTACGTGCTGGATGAGGACACCGTTGG
Seq C2 exon
ACACGATGACATCATTGGGAAGATCTCATTGAGCAAAGAGGCGATCACAGCCGACCCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-'4-7,'4-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(23.2=100)
A:
PF0016825=C2=FE(46.3=100)
C2:
PF0016825=C2=PD(11.0=40.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGAAGCAGTGACCCCTA
R:
CTCGAGGGTCGGCTGTGATC
Band lengths:
119-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: