MmuEX6020434 @ mm10
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120649316-120663843:+
Coord C1 exon
chr5:120649316-120649534
Coord A exon
chr5:120654806-120654919
Coord C2 exon
chr5:120663726-120663843
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCTAGCCCCCCTCTTGCAGGAC
3' ss Score
8.76
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
CCCTGCATCCAGCCCACTCGCACCCCAGACCCGGACACGTGGGAACCGGCTGACAGCGTGCTTGGCCCGCAGCTGATGACATGTAGGGTCACCTCCTGGTCCAGCCTCAGAACCTCGGCAGACTCCTTGCCTGGAAAGTTTGGGACTGTGCGACATGGCCAAGAGCGGCTCGCTGAGTATCCGCGTGGTGGAGGGACGAGCACTGCCCGCCAAGGACGT
Seq A exon
GACAGCAACCATCTGGAGGAGCCTGAGCCCCTTTTGGGGGGAGGAGTACACCGTTCACCTTCCATTGGACTTCCACCACCTGGCCTTCTACGTGCTGGATGAGGACACCGTTGG
Seq C2 exon
GGGGAGCCTGGGTGCCCTGCGGCTGAAGGTGCGCCTCACTGAGGACCGGGTCCTGCCTTCCCAGTACTACCAGCCTCTCATGGAACTGCTTCTGGAGTCGGTGCAAGGGCCGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602_MULTIEX1-3/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(18.3=68.2)
A:
PF0016825=C2=FE(46.3=100)
C2:
NO
Main Skipping Isoform:
ENSMUST00000031606fB3361
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTAGGGTCACCTCCTGGT
R:
CACCGACTCCAGAAGCAGTTC
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types