GgaEX6015132 @ galGal3
Exon Skipping
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5916203-5917543:-
Coord C1 exon
chr17:5917390-5917543
Coord A exon
chr17:5916617-5916766
Coord C2 exon
chr17:5916203-5916289
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTCTCGCCCCACAGGGC
3' ss Score
12.84
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGTGGAGTTCGTAAAACTGGCTGCCACCTACTCCACGGTCAACCTGGGCCAGGGCTTCCCCGACTTCCCCCCACCAGAGTTTTTGAAGGAGGCGTTCAGCAGAGCGGTCAGCGGGGAGGAGGAGCACATGCTGCACCAGTACACCCGTGCCTTC
Seq A exon
GGCCACCCACCGCTGGTGAAAATCCTCGCCCAGCTTTTTGGGAAGCTGCTCGGACGAGACCTGGATCCTATGACCAATGTGATGGTGACTGTGGGGGCATACCAGGCCCTTTTCTGCTGCTTCCAGGCTTTCATTGATGAAGGCGATGAG
Seq C2 exon
GTGATAATCATTGAGCCCTTTTTCGACTGCTATGAGCCAATGGTGAAAATGGCTGGTGGGACACCCGTGTACATCCCTCTGAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604-'6-5,'6-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(10.6=78.8)
A:
PF0015516=Aminotran_1_2=FE(12.6=100)
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTAAAACTGGCTGCCACC
R:
CGGTCTCAGAGGGATGTACAC
Band lengths:
234-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]