HsaEX0012849 @ hg38
Exon Skipping
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128838051-128842801:-
Coord C1 exon
chr9:128842654-128842801
Coord A exon
chr9:128838218-128838367
Coord C2 exon
chr9:128838051-128838137
Length
150 bp
Sequences
Splice sites
3' ss Seq
AACCCCTGCTGTCCTGGCAGGGT
3' ss Score
8.17
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTGGAGTTTGTGAAACTGGCCAGTGAGCATGACGTCGTGAACTTGGGCCAGGGCTTCCCGGATTTCCCACCACCAGACTTTGCCGTGGAAGCCTTTCAGCACGCTGTCAGTGGAGACTTCATGCTTAACCAGTACACCAAGACATTT
Seq A exon
GGTTACCCACCACTGACGAAGATCCTGGCAAGTTTCTTTGGGGAGCTGCTGGGTCAGGAGATAGACCCGCTCAGGAATGTGCTGGTGACTGTTGGTGGCTATGGGGCCCTGTTCACAGCCTTCCAGGCCCTGGTGGACGAAGGAGACGAG
Seq C2 exon
GTCATCATCATCGAACCCTTTTTTGACTGCTACGAGCCCATGACAATGATGGCAGGGGGTCGTCCTGTGTTTGTGTCCCTGAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-'14-35,'14-34,20-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
A:
PF0015516=Aminotran_1_2=FE(12.6=100)
C2:
PF0015516=Aminotran_1_2=FE(17.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAAACTGGCCAGTGAGC
R:
GGCTTCAGGGACACAAACACA
Band lengths:
226-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development