MmuEX6100216 @ mm9
Exon Skipping
Gene
ENSMUSG00000039648 | Ccbl1
Description
cysteine conjugate-beta lyase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30043573-30047592:-
Coord C1 exon
chr2:30047445-30047592
Coord A exon
chr2:30043735-30043884
Coord C2 exon
chr2:30043573-30043659
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGACCGTGCTGTTCTGGCAGGGT
3' ss Score
8.12
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTGGAGTTTACCAGACTGTCCAAGGAGTATGATGTCGTGAACTTGGGCCAGGGCTTCCCTGACTTCTCACCGCCAGACTTTGCTGTGCAAGCTTTTCAGCAGGCTACCACTGGGAACTTCATGCTCAACCAGTACACCTCAGCGTTT
Seq A exon
GGTTACCCTCCACTGACAAAGATCCTGGCAAGTTTCTTTGGCAAGCTGCTGGGACAGGAGATGGACCCACTCAAGAATGTGCTGGTGACAGTGGGAGCCTATGGGGCCTTGTTCACAGCCTTTCAGGCCCTGGTGGATGAAGGAGACGAG
Seq C2 exon
GTCATCATCATCGAACCTGCTTTTAATTGTTACGAACCCATGACAATGATGGCTGGAGGTCGCCCTGTGTTCGTGTCCCTGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648-'7-10,'7-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
A:
PF0015516=Aminotran_1_2=FE(12.6=100)
C2:
PF0015516=Aminotran_1_2=PD(22.9=93.1),PF0015516=Aminotran_1_2=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGTTTACCAGACTGTCC
R:
CAGCCTCAGGGACACGAACA
Band lengths:
235-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: