RnoEX0047939 @ rn6
Exon Skipping
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8755244-8758119:-
Coord C1 exon
chr3:8757972-8758119
Coord A exon
chr3:8755406-8755555
Coord C2 exon
chr3:8755244-8755330
Length
150 bp
Sequences
Splice sites
3' ss Seq
CATGCTGTCCTGGCTGGCAGGGT
3' ss Score
7.76
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGTGGAGTTTGGCAAACTGACCAAGGAGTATGACGTCGTGAACTTGGGTCAGGGCTTCCCTGACTTCTCGCCTCCGGACTTTGCAACGCAAGCTTTTCAGCAGGCTACCAGTGGGAACTTCATGCTCAACCAGTACACCAGGGCATTT
Seq A exon
GGTTACCCACCACTGACAAACGTCCTGGCAAGTTTCTTTGGCAAGCTGCTGGGACAGGAGATGGACCCACTCACGAATGTGCTGGTGACAGTGGGTGCCTATGGGGCCTTGTTCACAGCCTTTCAGGCCCTGGTGGATGAAGGAGATGAG
Seq C2 exon
GTCATCATCATGGAACCTGCTTTTGACTGTTATGAACCCATGACAATGATGGCTGGAGGTTGCCCTGTGTTCGTGACTCTGAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
A:
PF0015516=Aminotran_1_2=FE(12.6=100)
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Main Skipping Isoform:
ENSRNOT00000021865fB7511
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCAAACTGACCAAGGAGT
R:
GGCTTCAGAGTCACGAACACA
Band lengths:
226-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]