GgaEX6015190 @ galGal3
Exon Skipping
Gene
ENSGALG00000004052 | GPR107
Description
NA
Coordinates
chr17:6416074-6417052:+
Coord C1 exon
chr17:6416074-6416162
Coord A exon
chr17:6416312-6416478
Coord C2 exon
chr17:6417018-6417052
Length
167 bp
Sequences
Splice sites
3' ss Seq
AATAAAATTTGTTTCCTCAGTGT
3' ss Score
7.35
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GATGAAGAAGTGGATTACTGTATTTTGAATAAGAAACCTGAGCAAGGTGTTTCTGTTGTAATCTTACTTCTGGACTTCAAAAATGATGT
Seq A exon
TGTGAAGGTACAGTTCTCTGCAGAAGCTTCTCACCTGCTGCCTAAAATTTCATTTGTGTCTGACGAAAATGCCACTGCCTTGATTACCAAGCCACCAAAATCTTCTGAAGATAAAAGTGATTCTGTTAAAAGTCCAACGGAGACTAACAAAAATACAGCTGGCAAAG
Seq C2 exon
ATACGAAGTCCAAACGAAGTACAACATCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.526 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATTTTGAATAAGAAACCTGAGCA
R:
CTGAGAGGATGTTGTACTTCGT
Band lengths:
106-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]