DreEX6011739 @ danRer10
Exon Skipping
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31885099-31886715:-
Coord C1 exon
chr5:31886627-31886715
Coord A exon
chr5:31886384-31886523
Coord C2 exon
chr5:31885099-31885124
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATCACTTTCATTATCCTCAGTGT
3' ss Score
8.44
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
GATGAGGGTCTAGATTACTGTCCTCTGAAAAAGGATCCAAGTAGTAGTTTCGCTGGAGTGCTTCTCTTACTGGACTTTAAGCATAATCT
Seq A exon
TGTCAAGAAAAAGACTTCAGCAGAGACGGGCGTTTTTCCCAAAATCATGGCTGTGCCACCTAAAAAATCTGAAGAGGTGCAAGTTGAAAAGGGGAAGGAACCCCAAAACAAGGAGCCAGATGATGGATCTCAGTCTAAGG
Seq C2 exon
CTTCTAAATCCAAGCGTGATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200-'6-5,'6-3,7-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.521 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGGTCTAGATTACTGTCCTCTG
R:
GCATCACGCTTGGATTTAGAAG
Band lengths:
109-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]