MmuEX0021630 @ mm9
Exon Skipping
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31024317-31029759:+
Coord C1 exon
chr2:31024317-31024399
Coord A exon
chr2:31027462-31027601
Coord C2 exon
chr2:31029722-31029759
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCCATGGATGTAGAGT
3' ss Score
5.79
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAGAAGTCCATGTCTTCTGTCACTCTTGTCATCTTAGACATCTCTGGAAGCAT
Seq A exon
AGTCAAGGTCAGATCCCCACCAGAAGCTGGTAAGCAGTTACCAGAGATTGTCTTCAGCAAGGATGAGAAAATCCTGAGTCAGAGCCAGGAGCCTGCTGTCAGCTCCAACCCCAAAGACAGTGAGGCTCGGAGAACCCTCG
Seq C2 exon
ATGGTTTCAAGGCTGGACGAAGTACAGTGGACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.458 C2=0.077
Domain overlap (PFAM):
C1:
PF0400010=Sas10_Utp3=FE(38.6=100)
A:
PF0400010=Sas10_Utp3=PD(7.1=10.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCCATGTCTTCTGTCACT
R:
CTTTGAGTCCACTGTACTTCGTCC
Band lengths:
90-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: