RnoEX0039583 @ rn6
Exon Skipping
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10672535-10678501:-
Coord C1 exon
chr3:10678419-10678501
Coord A exon
chr3:10675213-10675352
Coord C2 exon
chr3:10672535-10672572
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCTTCCATGGATAGAGT
3' ss Score
6.71
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAAAAGTCCATGTCTTCTGTCACTCTGCTCATCTTAGACATCTCCGGAAGTGG
Seq A exon
AGTCAAGGTCAGATCCCCACCAGAAGCTGGCAAGCAGTTACCCGAGATTGTCTTCAGCAAGGATGAGAAAGTCCCGAGTCGGAGCCAGGAGCCTGCTGTCAGCTCCAACCCCAAAGACAGCAAGGTGCAGAGAACCCCTG
Seq C2 exon
ATGGTTCCAAGGCTCAACGAAGTACAGTGGATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.625 C2=0.654
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTCCATGTCTTCTGTCACTCT
R:
CTTTGAATCCACTGTACTTCGTTGA
Band lengths:
90-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]