MmuEX0021630 @ mm10
Exon Skipping
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31168797-31174239:+
Coord C1 exon
chr2:31168797-31168879
Coord A exon
chr2:31171942-31172081
Coord C2 exon
chr2:31174202-31174239
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCCATGGATGTAGAGT
3' ss Score
5.79
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAGAAGTCCATGTCTTCTGTCACTCTTGTCATCTTAGACATCTCTGGAAGCAT
Seq A exon
AGTCAAGGTCAGATCCCCACCAGAAGCTGGTAAGCAGTTACCAGAGATTGTCTTCAGCAAGGATGAGAAAATCCTGAGTCAGAGCCAGGAGCCTGCTGTCAGCTCCAACCCCAAAGACAGTGAGGCTCGGAGAACCCTCG
Seq C2 exon
ATGGTTTCAAGGCTGGACGAAGTACAGTGGACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.401 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000056433fB10782
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCCATGTCTTCTGTCACT
R:
CTTTGAGTCCACTGTACTTCGTCC
Band lengths:
90-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types