BtaEX6046687 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100444346-100447368:+
Coord C1 exon
chr11:100444346-100444425
Coord A exon
chr11:100445603-100445742
Coord C2 exon
chr11:100447331-100447368
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTACTTGAATATAGAGT
3' ss Score
4.41
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GATGAAGATGTGAATTACTGTATTTTAAAGAAGCAGTCTGCCTCTGTCACGCTTTTAATCCTAGACATCTCCAGAAGTGA
Seq A exon
AGTGAAAATAAGATCTCCACCAGAAGCTGGTGCCCAGTTACCAAAGATCATCTTTACCAAGGATGAGAAGGTTGTTGGTCAGAGCCAGGAGCCTGGTGTTAACCCTGTCTCATCAGGCAGCCAGGCTCCGAAAGAACAAG
Seq C2 exon
AAAGTGGAAAGTCTAAAAGAAGTACCGTGGATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.438 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTATTTTAAAGAAGCAGTCTGCC
R:
CTTTGAATCCACGGTACTTCTTT
Band lengths:
102-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]