HsaEX6063457 @ hg38
Exon Skipping
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:HGNC:17830]
Coordinates
chr9:130077299-130083602:+
Coord C1 exon
chr9:130077299-130077378
Coord A exon
chr9:130079630-130079769
Coord C2 exon
chr9:130083565-130083602
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTATTTGAATGTAGGGT
3' ss Score
7.42
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GATGAAGATGTGAATTACTGTATTTTAAAGAAACAGTCTGTCTCTGTCACCCTTTTAATCCTAGACATCTCCAGAAGTGA
Seq A exon
GGTAAGAGTAAAGTCTCCACCAGAAGCTGGTACCCAGTTACCAAAGATCATCTTCAGCAGGGATGAGAAAGTCCTTGGTCAGAGCCAGGAGCCTAATGTTAACCCTGCTTCAGCAGGCAACCAGACCCAGAAGACACAAG
Seq C2 exon
ATGGTGGAAAGTCTAAAAGAAGTACAGTGGATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358-'8-11,'8-7,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.498 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000493417fB16573
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAACAGTCTGTCTCTGTCACC
R:
TTGAATCCACTGTACTTCTTTTAGAC
Band lengths:
90-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains