GgaEX6015190 @ galGal4
Exon Skipping
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5829556-5830532:+
Coord C1 exon
chr17:5829556-5829644
Coord A exon
chr17:5829794-5829960
Coord C2 exon
chr17:5830498-5830532
Length
167 bp
Sequences
Splice sites
3' ss Seq
AATAAAATTTGTTTCCTCAGTGT
3' ss Score
7.35
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GATGAAGAAGTGGATTACTGTATTTTGAATAAGAAACCTGAGCAAGGTGTTTCTGTTGTAATCTTACTTCTGGACTTCAAAAATGATGT
Seq A exon
TGTGAAGGTACAGTTCTCTGCAGAAGCTTCTCACCTGCTGCCTAAAATTTCATTTGTGTCTGACGAAAATGCCACTGCCTTGATTACCAAGCCACCAAAATCTTCTGAAGATAAAAGTGATTCTGTTAAAAGTCCAACGGAGACTAACAAAAATACAGCTGGCAAAG
Seq C2 exon
ATACGAAGTCCAAACGAAGTACAACATCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.526 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATTTTGAATAAGAAACCTGAGCA
R:
CTGAGAGGATGTTGTACTTCGT
Band lengths:
106-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]