MmuEX6078753 @ mm10
Exon Skipping
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57242941-57245111:-
Coord C1 exon
chr17:57245029-57245111
Coord A exon
chr17:57244247-57244368
Coord C2 exon
chr17:57242941-57243134
Length
122 bp
Sequences
Splice sites
3' ss Seq
GATTCCTCCCCTCACCCCAGGGT
3' ss Score
8.04
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AGACGGAACTCCCATGAATGCCCTCTGGATAGAAACAGCAGCAACTTCCTGGTCCTGTTCCTCATCAATATCAAGGACCTGCA
Seq A exon
GGTCCAAGTCCGAAAATATGGGGAGCAGAAGTTGTTCATCTCCCCTGGCCTTCTCCCTGAAGCTCCCACCCAGTCAGGTCCCCCGAAACCAGACCCAGCAGGCACCCCCAAGGACAACCACG
Seq C2 exon
TCATTCACCCATCTCCTACAGAGATGTCTGCAGTCAAGGAGAATCAGACAGCGCCCCAGGTTTCAGGGGATAAAACTACCCCAGGGGAACACAGGCACTCATCCGAGAGACAGCCACCCACGCAGGACCCCAGTGGGAAGGAGAAGGATCAGGTGTTGGGACTGGGCCACCTCAATGACTCCTACAACTTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823-'7-6,'7-5,10-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.667 C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATGAATGCCCTCTGGAT
R:
TAGGAGTCATTGAGGTGGCCC
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types