BtaEX6038650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017291 | GPR108
Description
Bos taurus G protein-coupled receptor 108 (GPR108), mRNA. [Source:RefSeq mRNA;Acc:NM_001075333]
Coordinates
chr7:18972979-18974303:-
Coord C1 exon
chr7:18974221-18974303
Coord A exon
chr7:18973143-18973267
Coord C2 exon
chr7:18972979-18973043
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCACATCATCCCCAGGGT
3' ss Score
8.58
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AATCGGGACTCCCATGAGTGTCCTCTCCGGAAAAACAGTAGCAGCCTCCTGGTTCTCTTCCTCATCAACACCAAGGATCTGGA
Seq A exon
GGTCCAGGTACGAAAGTATGGGGAGCAGAAAAAGCTATTCATCTCTGCTGGGCTCCTCCCGGAATCACCCTCCAAACCAGGGCTCCCGAAGTCAGAGCACATGGTCACCCCCAAGGTGGACCACG
Seq C2 exon
CAGGGACCACTGCTGCACCTGACAAGGCCAAGTCAAAACCCACAGGGTTACAAGGGGACCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017291-'10-9,'10-7,11-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.465 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCATGAGTGTCCTCTCCG
R:
CTGCCGGTCCCCTTGTAAC
Band lengths:
140-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]