HsaEX6092321 @ hg38
Exon Skipping
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:HGNC:17829]
Coordinates
chr19:6734005-6735704:-
Coord C1 exon
chr19:6735622-6735704
Coord A exon
chr19:6734183-6734307
Coord C2 exon
chr19:6734005-6734054
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCACCCCACCCTCACCCCAGGGT
3' ss Score
8.03
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ACCCGGGATTTCCAGGACTGCCCTCTCCAGAAAAACAGTAGCAGTTTCCTGGTCCTGTTCCTCATCAACACCAAGGATCTGCA
Seq A exon
GGTCCAGGTGCGGAAGTATGGAGAGCAGAAGACGTTGTTTATCTTTCCCGGGCTCCTCCCGGAAGCACCCTCCAAACCAGGGCTCCCGAAGCCACAGGCCACAGTCCCCCGCAAGGTGGATGGCG
Seq C2 exon
GAGGGACCTCTGCAGCCAGCAAGCCCAAGTCAACACCCGCAGTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734-'11-10,'11-8,14-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.447 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGATTTCCAGGACTGCC
R:
CTGAATCACTGCGGGTGTTGA
Band lengths:
130-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains