HsaEX6092321 @ hg19
Exon Skipping
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:17829]
Coordinates
chr19:6734016-6735715:-
Coord C1 exon
chr19:6735633-6735715
Coord A exon
chr19:6734194-6734318
Coord C2 exon
chr19:6734016-6734065
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCACCCCACCCTCACCCCAGGGT
3' ss Score
8.03
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ACCCGGGATTTCCAGGACTGCCCTCTCCAGAAAAACAGTAGCAGTTTCCTGGTCCTGTTCCTCATCAACACCAAGGATCTGCA
Seq A exon
GGTCCAGGTGCGGAAGTATGGAGAGCAGAAGACGTTGTTTATCTTTCCCGGGCTCCTCCCGGAAGCACCCTCCAAACCAGGGCTCCCGAAGCCACAGGCCACAGTCCCCCGCAAGGTGGATGGCG
Seq C2 exon
GAGGGACCTCTGCAGCCAGCAAGCCCAAGTCAACACCCGCAGTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.442 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGATTTCCAGGACTGCC
R:
CTGAATCACTGCGGGTGTTGA
Band lengths:
130-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)