DmeEX6001436 @ dm6

Exon Skipping

Gene

Description

This gene is referred to in FlyBase by the symbol DmelCG12121 (FBgn0030109). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is X:9228796..9232378. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.

Coordinates

chrX:9230700-9231938:-

Coord C1 exon

chrX:9231828-9231938

Coord A exon

chrX:9231621-9231766

Coord C2 exon

chrX:9230700-9231558

Length

146 bp

Sequences

Splice sites

3' ss Seq

ATCCGCTTTCTTCCTTGCAGATG

3' ss Score

12.58

5' ss Seq

TAAGTATGT

5' ss Score

4.58

Exon sequences

Seq C1 exon

AATGACCGTCGCCAGTACATCGCACTCAGCACCTTTGGATTCTACACTAATGGCCATTTGGATGTGCAGCTCAGCAAATTGACTTTTGACAATGAGCAGTCTACAGATTTG

Seq A exon

ATGGGTCTGTCGCTGGATAAGACCACTATTGACCAGCTTAATCCCTATTTGGACTCGCATCAAAACAAATGCATTCTCGAGGAATCACCTAAATCCCAGATCAGCGGACCCATTCTCTTCTTCGTGCTGGACCTCAAGGAGCTTAA

Seq C2 exon

AGTTCGTGTTAAGTGCTCCCCCGAATGGCACAATATGCACATCTACAACCAAATCCCGTCCAGAACCAAGCGGCACTCACACATGGCCAAGGTCAGCGATTCGGTTCTGTTTCGCCAGACCCGCGCTGCCCAAGATTTCTCCGCCGAGGGGCCAGATGAGTCCATGGAGGATCCCTTGGAGCAAGAACCGACGGATTTAAAGTCTTCCTCGCCTGCTGCGGTTGCAGGCAAAATTGAGCTGCCCAAAGATGAAGGTGCACCCAAGGTAGATGCTCCTGCCCAAAATGTTGATGCTGTCAAAGAGGAGTCTGTTCCCAAGCCAGAAGTGGCTGCCAATCAGAATATTTCTGACAAGCAGGAACTGCCTCCCCCACCAAATGCCGCCCCTAAAGTGGAGGAAGCCGTTAAGAGTGAACAGAAGCAGGAGGAAGCCCCCGCTGAAAAGGATGAAACCCCTTCGAAAAAGGAGGAAACCCCAGCAAAGCAAGTATCCGTAGAAG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0030109-'1-2,'1-1,2-2=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features