GgaEX6015288 @ galGal4
Exon Skipping
Gene
ENSGALG00000003500 | TSC1
Description
tuberous sclerosis 1 [Source:HGNC Symbol;Acc:HGNC:12362]
Coordinates
chr17:6733690-6734671:-
Coord C1 exon
chr17:6734556-6734671
Coord A exon
chr17:6734187-6734310
Coord C2 exon
chr17:6733690-6733802
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTGTATTACTTTTCAATAGGTT
3' ss Score
8.99
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
TTTCAGGGACGTCTACCCCATATTCCACTCCTCGGCTAACACTATCACAACTGCCAGGGCAGCTACCTCAGATTCTGAGCCCGCAGTCAATAAAGCTGTCAACTGAGCCACAGCAG
Seq A exon
GTTACCATCTGGAGTCCTTCTGCAGTTTGTGGTATGACCACTCCACCAACCTCCCCTGGAATTGTCCCATCAGAGTCATCCCAGTCAACATCACAACCTTACAGCAAAGCTTTTGGCACATCTG
Seq C2 exon
CAGTGGGGAAGGGAACACCTTTGGGGACACCAGCCACATCTCCTCCACCCTGCACTTCAGATGACTTTGTGCATGTCTCACTTCCTTCAGCTGCTGCCACACCTCCTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500-'11-16,'11-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.845 C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.3=100)
A:
PF043887=Hamartin=FE(5.7=100)
C2:
PF043887=Hamartin=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGTCTACCCCATATTCCA
R:
TTTTAGGAGGTGTGGCAGCAG
Band lengths:
222-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]