GgaEX6015767 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1097326-1108676:+
Coord C1 exon
chr18:1097326-1097559
Coord A exon
chr18:1104064-1104324
Coord C2 exon
chr18:1108251-1108676
Length
261 bp
Sequences
Splice sites
3' ss Seq
CATGTTTTTCTTTTCCACAGGTG
3' ss Score
13.5
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCTCCAGTGAAAGAGTCAATAAGCAAATTCATGGCCTATGTCCACACAAGTGTCAACGAGATGTCCCAACTGTACCTGAGCAACGAGCGGCGGTACAACTACACCACCCCCAAATCATTCCTCGAGCAGATCAAACTCTATCAGAATTTGCTACTGAAAAAGAGAAAGGATTTAACAGCAAAAATGGAGAGGCTGGAGAATGGCCTGGAGAAGCTCAACAGTACATCTGCCCAG
Seq A exon
GTGGATGACCTGAAGGCCAAGCTGGCAGCCCAGGAAGTGGAGCTAAAGCAGAAGAATGAGGATGCCGATAAGCTGATCCAGGTGGTGGGTGTGGAGACAGAGAAAGTGAGCAGGGAGAAAGCAGCTGCTGATGAAGAGGAGCAGAAAGTGGCACTCATCACCCAGGAGGTCCAGCAGAAACAGAAGGACTGTGAGGAGGACCTGGCCAAAGCTGAGCCTGCCCTGGCAGCTGCCCAGGCTGCTCTGAACACCCTCAACAAG
Seq C2 exon
AAGAACCTGACGGAACTGAAATCCTTTGGGTCACCACCTCCGGCTGTCAGCAATGTCACCGCTGCTGTGATGGTGCTGATGGCCCCGGGAGGGAAGATTCCCAAGGACAGGAGCTGGAAGGCAGCGAGAGCCACCATGGCCAGGGTGGATGCGTTCCTGGACTCCTTGATCAAGTTCGACAAGGAGAACATCCACGAGAACTGCCTCAAAGCCCTCCAGCCTTATTTAGAGGATCCCAAGTTTAAACCCGAATTCGTAACCACCAAGTCCTACGCGGCAGCCGGCCTCTGCTCGTGGGTGGTGAATATCGTGCGCTTCCACGAGGCCTACTGCGACGTGGAGCCCAAGCGGCAGGCCCTGAGCAGAGCCAACGCTGAGCTGGCGGCTGCACAGGACAAGCTGGCCAGCATCAAGGCCAAAATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'54-55,'54-54,55-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.264 C2=0.028
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
A:
PF127772=MT=FE(25.0=100)
C2:
PF127772=MT=FE(41.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCCCAAATCATTCCTCG
R:
CAAGGAGTCCAGGAACGCATC
Band lengths:
299-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]