RnoEX0028648 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52433623-52466133:-
Coord C1 exon
chr10:52465900-52466133
Coord A exon
chr10:52454095-52454355
Coord C2 exon
chr10:52433623-52434048
Length
261 bp
Sequences
Splice sites
3' ss Seq
TCTGGTGTTCTCTGATGCAGGTG
3' ss Score
10.29
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCTGCAGTGAAGCAATCGATTAGCAAGTTCATGGCCTTTGTCCACATAAGTGTCAACAAGATATCCCAGTCATACCTGATCAATGAGCAGCGCTACAACTACACCACTCCCAAGTCCTTTCTGGAGTTCATCAGACTATACCAGAGCTTGCTGGAGAGGAATGGAAAAGAGCTCCAGTCCAAGGTGGAAAGGCTGGAGAATGGGCTGTTAAAGCTGCACAGCACCTCAGCCCAG
Seq A exon
GTGGATGATCTGAAAGCCAAGCTTGCCACCCAGGAAGTGGAGCTGAGACAGAAGAATGAAGATACAGACAAGCTGATTCAGGTGGTGGGTGTGGAGACCAGCAAAGTGAGCAGAGAGAAAGCCATTGCAGACGAAGAGGAGCAGAAGGTGGCACTGATCATGCTGGAGGTGCAGCAGAAACAGAAAGACTGTGAGGAGGACCTGGCTAAAGCTGAACCAGCCCTTACCGCAGCCCAGGCAGCCCTCAACACACTCAACAAG
Seq C2 exon
ACCAACCTGACAGAGCTGAAGTCATTTGGTTCGCCACCTCTGGCTGTCAGCAATGTCAGTGCAGCAGTGATGGTCCTCATGGCCCCAGGGGGGAAGGTGCCCAAGGACCGCAGCTGGAAGGCTGCCAAGATCACCATGACCAAGGTGGACAGCTTCCTGGATTCCCTAATCCACTTCGACAAGGAGAACATTCATGAGAATTGCCTCAAAGCCATCAGGCCATACCTGCAAGATCCTGCTTTCAACCCAGAGTTTGTGGCCACCAAGTCCTACGCAGCCGCAGGCCTCTGCTCTTGGGTCATAAACATTGTGAGGTTCTACGAGGTCTTCTGTGATGTGGAACCAAAGCGCCAAGCTTTGAACAAAGCCACCTCAGACCTCACAGCTGCCCAGGAGAAGCTGGCAGCCATCAAAGCCAAGATCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'70-65,'70-64,72-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
A:
PF127772=MT=FE(25.0=100)
C2:
PF127772=MT=FE(41.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGGAGAATGGGCTGTTA
R:
GGCCACAAACTCTGGGTTGAA
Band lengths:
306-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]