MmuEX6086227 @ mm9

Exon Skipping

Gene

ENSMUSG00000056752 | Dnahc9

Description

dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]

Coordinates

chr11:65741086-65768552:-

Coord C1 exon

chr11:65768319-65768552

Coord A exon

chr11:65760971-65761231

Coord C2 exon

chr11:65741086-65741511

Length

261 bp

Sequences

Splice sites

3' ss Seq

CTCTGTGTTCTCTGATGCAGGTG

3' ss Score

11.82

5' ss Seq

AAGGTAGGA

5' ss Score

9.45

Exon sequences

Seq C1 exon

CCTGCGGTGAAGCAGTCAATTAGCAAGTTCATGGCCTTTGTCCACATAAGTGTCAACAAGACATCCCAGTCATACCTGACCAATGAGCAGCGATACAACTACACAACACCCAAGTCCTTTCTGGAGTTCATCAGACTGTACCAGAGCTTGCTGGAGAGAAATGGAAAAGAGCTCCAGGCCAAGGTGGAGAGGCTGGAGAACGGGCTGTTGAAACTGCACAGCACCTCGGCCCAG

Seq A exon

GTGGATGATCTGAAAGCGAAGCTTGCCACCCAGGAAGTGGAGCTGAGGCACAAGAATGAAGATACAGACAAGCTGATTCAGGTGGTGGGTGTGGAGACCAGCAAAGTGAGCAGAGAGAAAGCCATTGCTGACGAGGAGGAGCAGAAGGTGGCCCTGATCATGCTGGAGGTGCAGCAGAAACAGAAAGACTGTGAAGAGGACCTGGCTAAGGCCGAGCCAGCCCTGACCGCAGCGCAGGCGGCCCTCAACACTCTCAACAAG

Seq C2 exon

ACCAACCTGACAGAGCTGAAGTCATTTGGTTCCCCACCTCTGGCTGTCAGCAATGTCAGCGCCGCGGTGATGGTTCTCATGGCCCCAGGGGGCAAGGTGCCCAAGGACCGCAGCTGGAAGGCTGCCAAAATCACCATGGCCAAGGTGGACAGCTTCCTGGATTCCCTAATCCACTTCGACAAGGAGAACATTCATGAGAATTGCCTCAAAGCCATCAGGCCATACCTGCAAGATCCTGCATTCAACCCAGAGTTTGTGGCCACCAAGTCCTATGCAGCTGCAGGCCTCTGCTCTTGGGTAATCAATATTGTGAGGTTCTATGAGGTCTTCTGTGATGTGGAACCAAAGCGCCAGGCTTTGAACAAAGCCACCTCAGACCTCACAACTGCCCAAGAGAAGCTGGCAGCCATCAAAGCCAAGATCACA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000056752-'51-52,'51-51,52-52=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.013 A=0.149 C2=0.009

Domain overlap (PFAM):

C1:

PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)

A:

PF127772=MT=FE(25.0=100)

C2:

PF127772=MT=PU(72.1=99.2),PF151201=DUF4561=PU(40.0=33.6),PF093255=Vps5=PU(57.6=30.4),PF104734=CENP-F_leu_zip=PU(43.1=24.8),PF083176=Spc7=PU(48.6=27.2),PF097314=Mitofilin=PU(48.1=31.2),PF141821=YgaB=PU(50.0=24.0)

Main Inclusion Isoform:

ENSMUSP00000079494