HsaEX7009220 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11822801-11854428:+
Coord C1 exon
chr17:11822801-11823034
Coord A exon
chr17:11834638-11834898
Coord C2 exon
chr17:11854003-11854428
Length
261 bp
Sequences
Splice sites
3' ss Seq
CCCGTGCTTCTCCAATGCAGGTG
3' ss Score
10.63
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCCACAGTAAAGCAGTCGATTAGCAAATTCATGGCCTTTGTCCACACAAGTGTCAACCAAACATCCCAGTCTTATCTGAGCAATGAACAGCGCTACAACTATACAACTCCCAAGTCCTTTCTGGAGTTCATCAGACTCTACCAGAGCTTGTTGCACAGGCACAGAAAAGAGCTCAAGTGCAAGACAGAGCGGTTGGAGAACGGGCTGCTGAAGCTGCATAGCACCTCTGCCCAG
Seq A exon
GTGGATGATCTGAAAGCAAAGCTGGCTGCCCAGGAAGTAGAGCTGAAGCAGAAAAATGAAGATGCAGACAAACTGATTCAGGTCGTGGGTGTGGAGACTGACAAAGTGAGCAGAGAGAAAGCCATGGCAGATGAAGAGGAGCAGAAGGTGGCCGTCATCATGCTAGAGGTGAAACAGAAGCAGAAGGACTGTGAGGAGGACCTGGCAAAGGCTGAGCCAGCACTCACAGCAGCGCAGGCAGCTCTCAACACCCTGAACAAG
Seq C2 exon
ACCAACCTGACAGAGCTGAAGTCATTTGGCTCTCCGCCTCTGGCCGTCAGCAATGTCAGCGCTGCGGTGATGGTACTGATGGCTCCCAGGGGTAGGGTGCCCAAGGACCGGAGCTGGAAGGCTGCTAAGGTCACCATGGCCAAAGTGGATGGCTTCCTGGACTCGCTAATAAACTTCAACAAAGAGAACATTCACGAGAACTGCCTCAAAGCCATCAGGCCGTATCTGCAAGACCCCGAGTTCAATCCTGAGTTTGTGGCCACCAAATCCTATGCGGCTGCAGGCCTCTGCTCCTGGGTCATCAATATTGTGAGATTTTATGAGGTGTTCTGTGATGTGGAACCCAAGCGCCAGGCACTGAACAAAGCCACCGCGGACCTCACAGCTGCCCAGGAGAAGCTGGCTGCCATCAAAGCCAAGATCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'89-83,'89-79,91-83=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
A:
PF127772=MT=FE(25.0=100)
C2:
PF127772=MT=FE(41.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGAGCAATGAACAGCGCT
R:
CACTTTGGCCATGGTGACCTT
Band lengths:
308-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains