GgaEX6015768 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1114199-1122037:+
Coord C1 exon
chr18:1114199-1114360
Coord A exon
chr18:1115039-1115272
Coord C2 exon
chr18:1121777-1122037
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCATCCCACTTCCAGGCT
3' ss Score
9.9
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTGCGTTGTGTTTTTCGCCCGTTGGCAACAAGCTGCGGGTCCGCAGCAGGAGGTTCCCCGCCATCGTGAGCTGCACGGCGATCGATTGGTTCCAGGAGTGGCCACAGGAGGCCCTCGAGTCCGTCAGCCTCCGCTTCCTGCGAGACACGGACAGCGTGGAG
Seq A exon
GCTCCAGTGAAAGAGTCAATAAGCAAATTCATGGCCTATGTCCACACAAGTGTCAACGAGATGTCCCAACTGTACCTGAGCAACGAGCGGCGGTACAACTACACCACCCCCAAATCATTCCTCGAGCAGATCAAACTCTATCAGAATTTGCTACTGAAAAAGAGAAAGGATTTAACAGCAAAAATGGAGAGGCTGGAGAATGGCCTGGAGAAGCTCAACAGTACATCTGCCCAG
Seq C2 exon
GTGGATGACCTGAAGGCCAAGCTGGCAGCCCAGGAAGTGGAGCTAAAGCAGAAGAATGAGGATGCCGATAAGCTGATCCAGGTGGTGGGTGTGGAGACAGAGAAAGTGAGCAGGGAGAAAGCAGCTGCTGATGAAGAGGAGCAGAAAGTGGCACTCATCACCCAGGAGGTCCAGCAGAAACAGAAGGACTGTGAGGAGGACCTGGCCAAAGCTGAGCCTGCCCTGGCAGCTGCCCAGGCTGCTCTGAACACCCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.264
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
C2:
PF127772=MT=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGTTTTTCGCCCGTTGG
R:
CTCCTCTTCATCAGCAGCTGC
Band lengths:
298-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]