MmuEX0015117 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65760971-65768868:-
Coord C1 exon
chr11:65768707-65768868
Coord A exon
chr11:65768319-65768552
Coord C2 exon
chr11:65760971-65761231
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTCATTATTTCTGGTGCTAGCCT
3' ss Score
3.12
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGACTCTCTGTTTCTCCCCTGTGGGGAACAAGCTGAGAATTCGAAGCAGGAAGTTCCCAGCCATTGTGAACTGTACTGCTATCAACTGGTTCCATGAGTGGCCTCAGGAGGCCCTAGAGTCTGTGAGCCTCCGATTCTTGCAGAATACAAAGAACATTGAG
Seq A exon
CCTGCGGTGAAGCAGTCAATTAGCAAGTTCATGGCCTTTGTCCACATAAGTGTCAACAAGACATCCCAGTCATACCTGACCAATGAGCAGCGATACAACTACACAACACCCAAGTCCTTTCTGGAGTTCATCAGACTGTACCAGAGCTTGCTGGAGAGAAATGGAAAAGAGCTCCAGGCCAAGGTGGAGAGGCTGGAGAACGGGCTGTTGAAACTGCACAGCACCTCGGCCCAG
Seq C2 exon
GTGGATGATCTGAAAGCGAAGCTTGCCACCCAGGAAGTGGAGCTGAGGCACAAGAATGAAGATACAGACAAGCTGATTCAGGTGGTGGGTGTGGAGACCAGCAAAGTGAGCAGAGAGAAAGCCATTGCTGACGAGGAGGAGCAGAAGGTGGCCCTGATCATGCTGGAGGTGCAGCAGAAACAGAAAGACTGTGAAGAGGACCTGGCTAAGGCCGAGCCAGCCCTGACCGCAGCGCAGGCGGCCCTCAACACTCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'50-51,'50-50,51-51
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.149
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
C2:
PF127772=MT=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTTCCCAGCCATTGTG
R:
TTCTGTTTCTGCTGCACCTCC
Band lengths:
299-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: