HsaEX6021130 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11822438-11834898:+
Coord C1 exon
chr17:11822438-11822599
Coord A exon
chr17:11822801-11823034
Coord C2 exon
chr17:11834638-11834898
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCTCTTTGGTTTTAGCCC
3' ss Score
8.39
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGACTCTCTGTTTCTCCCCTGTGGGAAACAAGCTAAGAGTCCGCAGCAGGAAGTTCCCAGCCATTGTGAACTGCACAGCCATCCACTGGTTCCACGAGTGGCCTCAGCAAGCATTGGAGTCTGTCAGCCTCCGCTTCTTGCAGAACACAGAGGGCATTGAG
Seq A exon
CCCACAGTAAAGCAGTCGATTAGCAAATTCATGGCCTTTGTCCACACAAGTGTCAACCAAACATCCCAGTCTTATCTGAGCAATGAACAGCGCTACAACTATACAACTCCCAAGTCCTTTCTGGAGTTCATCAGACTCTACCAGAGCTTGTTGCACAGGCACAGAAAAGAGCTCAAGTGCAAGACAGAGCGGTTGGAGAACGGGCTGCTGAAGCTGCATAGCACCTCTGCCCAG
Seq C2 exon
GTGGATGATCTGAAAGCAAAGCTGGCTGCCCAGGAAGTAGAGCTGAAGCAGAAAAATGAAGATGCAGACAAACTGATTCAGGTCGTGGGTGTGGAGACTGACAAAGTGAGCAGAGAGAAAGCCATGGCAGATGAAGAGGAGCAGAAGGTGGCCGTCATCATGCTAGAGGTGAAACAGAAGCAGAAGGACTGTGAGGAGGACCTGGCAAAGGCTGAGCCAGCACTCACAGCAGCGCAGGCAGCTCTCAACACCCTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'88-79,'88-78,89-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.115
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
C2:
PF127772=MT=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCTAAGAGTCCGCAGC
R:
CTCTAGCATGATGACGGCCAC
Band lengths:
303-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains