GgaEX6016294 @ galGal3
Exon Skipping
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7186280-7188657:+
Coord C1 exon
chr18:7186280-7186387
Coord A exon
chr18:7186714-7187011
Coord C2 exon
chr18:7188390-7188657
Length
298 bp
Sequences
Splice sites
3' ss Seq
CTTGCATTTTTTTCTGATAGCCT
3' ss Score
6.61
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTAGTGAAAGTATAGAAGGAGTGAGAGTAGAACATAATCCTGAGCTATCAGTAACTGTCACCACCAAGAAGTCTCATCAAACTTGGACGTTTGCTCTCACCTGTAAG
Seq A exon
CCTGCAAGAATGCTGTATCGAGTGGCATTGCTTTATGATGCCCATCGTCCACATTTCAGTATCATTGCAATATCTGCTGGAGACAGCACTACCCAGGTATCACAAGAAGTTCCAGAAAACTGTCAGGAGTGGATAGGAGGAAAGATGGTCCAGAATGGAATAGATCACTATATATACAAAGTCAGTATAGCTTTTAACACAGAAATCTTTGGAACTTTTCGCCAAACTGTTGTGTTTGATTTTGGATTGGAACCAGTCCTCATGCAACGAGTAATGATTGATGCTGCTTCAACTGAAG
Seq C2 exon
ATCTTGAATACCTGATGCATGCACGGCAACAGCTACTAACTACAGCTAAGCGTTGGGATTCTACTTCTAAGACTATTGTAGAATTTGAACCTAATGAAACTACTGAATTGGAGAAGAGCCTTCTTACCAGATACCAAATCCCTCTATCTGCTGACCAGTTATTTACACAATCTGTCCTGGACAAATCATTGACCAAGACCAACTATCAGTCACGGTTGCATGACCTCCTTTATATTGAGGAAATAGCACAGTATAAGGAAGTTAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCAGTAACTGTCACCACCA
R:
AAAGGAGGTCATGCAACCGTG
Band lengths:
295-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]