HsaEX0029678 @ hg38
Exon Skipping
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr17:67178659-67189696:-
Coord C1 exon
chr17:67189589-67189696
Coord A exon
chr17:67188319-67188616
Coord C2 exon
chr17:67178659-67178926
Length
298 bp
Sequences
Splice sites
3' ss Seq
TTATTTTAACTTCCTTGTAGCCT
3' ss Score
7.8
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CTTAGTGAATGTATAGAAGGAGTAAAGGTAGAGCACAATCCTGACCTGTCAGTTACTGTCAGCACCAAAAAATCCCACCAGACATGGACCTTTGCTCTCACTTGTAAG
Seq A exon
CCTGCAAGAATGCTGTATCGTGTAGCATTGCTTTATGATGCTCATCGTCCTCATTTTAGTATCATTGCAATATCTGCCGGAGATAGTACTACCCAGGTATCACAAGAAGTCCCAGAAAACTGTCAAGAATGGATAGGAGGAAAGATGGCCCAAAATGGATTAGATCATTACGTGTATAAAGTCGGGATAGCATTTAACACAGAAATATTTGGAACTTTTCGCCAAACCATAGTTTTCGACTTTGGATTGGAACCAGTACTCATGCAAAGAGTAATGATTGATGCAGCTTCTACAGAAG
Seq C2 exon
ATCTCGAATACCTGATGCATGCAAAACAGCAGCTAGTAACCACAGCTAAACGTTGGGATTCTTCCTCTAAGACTATTATAGATTTTGAACCTAATGAAACTACTGATTTGGAGAAGAGCCTTCTTATCAGATACCAAATTCCCCTCTCTGCTGACCAGCTATTTACTCAGTCCGTTTTAGACAAATCATTGACCAAGAGCAACTATCAGTCACGGTTACATGACCTTCTTTATATTGAGGAGATAGCCCAGTATAAAGAAATCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265_MULTIEX2-6/8=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.001
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACAATCCTGACCTGTCA
R:
ACCGTGACTGATAGTTGCTCT
Band lengths:
294-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development