MmuEX0022709 @ mm10
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107602936-107614118:+
Coord C1 exon
chr11:107602936-107603043
Coord A exon
chr11:107604066-107604363
Coord C2 exon
chr11:107613851-107614118
Length
298 bp
Sequences
Splice sites
3' ss Seq
CTATTTTGACTTCCTTGTAGCCT
3' ss Score
6.89
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
CTTAGTGAATGCATAGAGGGAGTTCAGGTGGAGCACAGCCCTGACCTGTCGGTCACCGTCAACACCAAAAAATCCCACCAGACGTGGACCTTTGCTCTGACCTGTAAG
Seq A exon
CCTGCAAGAATGCTGTATCGGGTAGCCTTGCTTTATGACGCTCATCGTCCTCATTTCAGTATCATTGCCATATCTGCCGGAGATAGTACTACCCAGGTATCACAAGAAGTCCCCGAGAACTGTCAAGAATGGATAGGAGGAAAGATGGCCCAAAATGGATTAGATCATTACGTGTATAAAGTCGGGATAGCATTTAACACAGAAATATTTGGAACTTTTCGCCAAACCATAGTTTTCGACTTTGGATTGGAGCCAGTACTCATGCAGAGGGTGATGATTGACGCAGCTTCTACAGAAG
Seq C2 exon
ATCTTGAATACCTGATGCATGCAAAGCGGCAGCTGGTAACCACAGCCAAGCGCTGGGACTCTTCTTCTAAGACTATTGTAGATTTTGAACCTAATGAAACTACTGATTTGGAGAAGAGCCTTTTGATCAGATACCAAATTCCTCTGTCTGCTGACCAGCTGTTTACACAGTCCGTCTTAGACAAATCATTGACCAAGACTAACTATCAGGCACGGCTGCACGACCTGCTTTATATTGAGGAGATAGCCCAGTATAAAGAAGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721-'21-18,'21-15,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTTCAGGTGGAGCACAG
R:
AGCCGTGCCTGATAGTTAGTCT
Band lengths:
308-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types